PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134844001
Common NameGSBRNA2T00134844001, LOC106413704
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 237aa    MW: 25632.9 Da    PI: 8.5964
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134844001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.11e-312103197
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++
  GSBRNA2T00134844001   2 SCNGCRVLRKGCSENCILRPCIqwiesADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNW 91 
                          6*********************9998666778********************************************************** PP

               DUF260  86 qleqlkaelall 97 
                          +++q+++e++l+
  GSBRNA2T00134844001  92 RICQAAVETVLR 103
                          ******999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.5721107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR  60
PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WRICQAAVET VLRGGSLRPI PELITHGGGF  120
PSATSEEASE ICAEMLKLQQ NDGSSDRNIY NHSRFSSSRS RSTLDSSPRK RKLDISLNPS  180
LPMKAVPSST RHQSRTPSMN SEESMTTTTT FWDNSASGAQ HGNGGGETSR LLNLFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172PRKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.114590.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134844001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895260.0AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709904.11e-176PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9FN111e-122LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A078CWS11e-176A0A078CWS1_BRANA; BnaC09g07260D protein
STRINGBra037847.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-121LOB domain-containing protein 37
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]